High-coverage genomes to elucidate the evolution of penguins
- Autores
- Pan, Hailin; Cole, Theresa L; Bi, Xupeng; Fang, Miaoquan; Zhou, Chengran; Yang, Zhengtao; Ksepka, Daniel T; Hart, Tom; Bouzat, Juan L.; Boersma, P. Dee; Bost, Charles-André; Cherel, Yves; Dann, Peter; Mattern, Thomas; Ellenberg, Ursula; Garcia Borboroglu, Jorge Pablo; Argilla, Lisa S.; Bertelsen, Mads F.; Fiddaman, Steven R.; Howard, Pauline; Labuschagne, Kim; Miller, Gary; Parker, Patricia; Phillips, Richard A.; Quillfeldt, Petra; Ryan, Peter G.; Taylor, Helen; Zhang, De-Xing; Zhang, Guojie; McKinlay, Bruce
- Año de publicación
- 2019
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Background: Penguins (Sphenisciformes) are a remarkable order of flightless wing-propelled diving seabirds distributed widely across the southern hemisphere. They share a volant common ancestor with Procellariiformes close to the Cretaceous-Paleogene boundary (66 million years ago) and subsequently lost the ability to fly but enhanced their diving capabilities. With ∼20 species among 6 genera, penguins range from the tropical Galápagos Islands to the oceanic temperate forests of New Zealand, the rocky coastlines of the sub-Antarctic islands, and the sea ice around Antarctica. To inhabit such diverse and extreme environments, penguins evolved many physiological and morphological adaptations. However, they are also highly sensitive to climate change. Therefore, penguins provide an exciting target system for understanding the evolutionary processes of speciation, adaptation, and demography. Genomic data are an emerging resource for addressing questions about such processes. Results: Here we present a novel dataset of 19 high-coverage genomes that, together with 2 previously published genomes, encompass all extant penguin species. We also present a well-supported phylogeny to clarify the relationships among penguins. In contrast to recent studies, our results demonstrate that the genus Aptenodytes is basal and sister to all other extant penguin genera, providing intriguing new insights into the adaptation of penguins to Antarctica. As such, our dataset provides a novel resource for understanding the evolutionary history of penguins as a clade, as well as the fine-scale relationships of individual penguin lineages. Against this background, we introduce a major consortium of international scientists dedicated to studying these genomes. Moreover, we highlight emerging issues regarding ensuring legal and respectful indigenous consultation, particularly for genomic data originating from New Zealand Taonga species. Conclusions: We believe that our dataset and project will be important for understanding evolution, increasing cultural heritage and guiding the conservation of this iconic southern hemisphere species assemblage.
Fil: Pan, Hailin. Bgi-shenzhen; China
Fil: Cole, Theresa L. University Of Otago; Canadá
Fil: Bi, Xupeng. Bgi-shenzhen; China
Fil: Fang, Miaoquan. Bgi-shenzhen; China
Fil: Zhou, Chengran. Bgi-shenzhen; China
Fil: Yang, Zhengtao. Bgi-shenzhen; China
Fil: Ksepka, Daniel T. Bruce Museum; Estados Unidos
Fil: Hart, Tom. University of Oxford; Reino Unido
Fil: Bouzat, Juan L.. Bowling Green State University; Estados Unidos
Fil: Boersma, P. Dee. University of Washington; Estados Unidos
Fil: Bost, Charles-André. Centre Detudes Biologiques de Chizé; Francia
Fil: Cherel, Yves. Centre Detudes Biologiques de Chizé; Francia
Fil: Dann, Peter. Phillip Island Nature Parks; Australia
Fil: Mattern, Thomas. University of Otago; Nueva Zelanda
Fil: Ellenberg, Ursula. Global Penguin Society; Estados Unidos. La Trobe University; Australia
Fil: Garcia Borboroglu, Jorge Pablo. University of Washington; Estados Unidos. Global Penguin Society; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Centro para el Estudio de Sistemas Marinos; Argentina
Fil: Argilla, Lisa S.. Otago Polytechnic; Nueva Zelanda
Fil: Bertelsen, Mads F.. Copenhagen Zoo; Dinamarca. University of Copenhagen; Dinamarca
Fil: Fiddaman, Steven R.. University of Oxford; Reino Unido
Fil: Howard, Pauline. Hornby Veterinary Centre; Nueva Zelanda. South Island Wildlife Hospital; Nueva Zelanda
Fil: Labuschagne, Kim. National Zoological Garden; Sudáfrica
Fil: Miller, Gary. University of Western Australia; Australia. University of Tasmania; Australia
Fil: Parker, Patricia. University of Missouri St. Louis; Estados Unidos
Fil: Phillips, Richard A.. Natural Environment Research Council; Reino Unido
Fil: Quillfeldt, Petra. Justus-Liebig-Universit ̈ at Giessen; Alemania
Fil: Ryan, Peter G.. University of Cape Town; Sudáfrica
Fil: Taylor, Helen. Vet Services Hawkes Bay Ltd; Nueva Zelanda. Wairoa Farm Vets; Nueva Zelanda
Fil: Zhang, De-Xing. Chinese Academy of Sciences; República de China
Fil: Zhang, Guojie. BGI-Shenzhen; China. Chinese Academy of Sciences; República de China. University of Copenhagen; Dinamarca
Fil: McKinlay, Bruce. Department of Conservation; Nueva Zelanda - Materia
-
GENOMICS
SPHENISCIFORMES
COMPARATIVE EVOLUTION
PHYLOGENETICS
SPECIATION
BIOGEOGRAPHY
DEMOGRAPHY
CLIMATE CHANGE
ANTARCTICA
EVOLUTION - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by/2.5/ar/
- Repositorio
.jpg)
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/113838
Ver los metadatos del registro completo
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High-coverage genomes to elucidate the evolution of penguinsPan, HailinCole, Theresa LBi, XupengFang, MiaoquanZhou, ChengranYang, ZhengtaoKsepka, Daniel THart, TomBouzat, Juan L.Boersma, P. DeeBost, Charles-AndréCherel, YvesDann, PeterMattern, ThomasEllenberg, UrsulaGarcia Borboroglu, Jorge PabloArgilla, Lisa S.Bertelsen, Mads F.Fiddaman, Steven R.Howard, PaulineLabuschagne, KimMiller, GaryParker, PatriciaPhillips, Richard A.Quillfeldt, PetraRyan, Peter G.Taylor, HelenZhang, De-XingZhang, GuojieMcKinlay, BruceGENOMICSSPHENISCIFORMESCOMPARATIVE EVOLUTIONPHYLOGENETICSSPECIATIONBIOGEOGRAPHYDEMOGRAPHYCLIMATE CHANGEANTARCTICAEVOLUTIONhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Background: Penguins (Sphenisciformes) are a remarkable order of flightless wing-propelled diving seabirds distributed widely across the southern hemisphere. They share a volant common ancestor with Procellariiformes close to the Cretaceous-Paleogene boundary (66 million years ago) and subsequently lost the ability to fly but enhanced their diving capabilities. With ∼20 species among 6 genera, penguins range from the tropical Galápagos Islands to the oceanic temperate forests of New Zealand, the rocky coastlines of the sub-Antarctic islands, and the sea ice around Antarctica. To inhabit such diverse and extreme environments, penguins evolved many physiological and morphological adaptations. However, they are also highly sensitive to climate change. Therefore, penguins provide an exciting target system for understanding the evolutionary processes of speciation, adaptation, and demography. Genomic data are an emerging resource for addressing questions about such processes. Results: Here we present a novel dataset of 19 high-coverage genomes that, together with 2 previously published genomes, encompass all extant penguin species. We also present a well-supported phylogeny to clarify the relationships among penguins. In contrast to recent studies, our results demonstrate that the genus Aptenodytes is basal and sister to all other extant penguin genera, providing intriguing new insights into the adaptation of penguins to Antarctica. As such, our dataset provides a novel resource for understanding the evolutionary history of penguins as a clade, as well as the fine-scale relationships of individual penguin lineages. Against this background, we introduce a major consortium of international scientists dedicated to studying these genomes. Moreover, we highlight emerging issues regarding ensuring legal and respectful indigenous consultation, particularly for genomic data originating from New Zealand Taonga species. Conclusions: We believe that our dataset and project will be important for understanding evolution, increasing cultural heritage and guiding the conservation of this iconic southern hemisphere species assemblage.Fil: Pan, Hailin. Bgi-shenzhen; ChinaFil: Cole, Theresa L. University Of Otago; CanadáFil: Bi, Xupeng. Bgi-shenzhen; ChinaFil: Fang, Miaoquan. Bgi-shenzhen; ChinaFil: Zhou, Chengran. Bgi-shenzhen; ChinaFil: Yang, Zhengtao. Bgi-shenzhen; ChinaFil: Ksepka, Daniel T. Bruce Museum; Estados UnidosFil: Hart, Tom. University of Oxford; Reino UnidoFil: Bouzat, Juan L.. Bowling Green State University; Estados UnidosFil: Boersma, P. Dee. University of Washington; Estados UnidosFil: Bost, Charles-André. Centre Detudes Biologiques de Chizé; FranciaFil: Cherel, Yves. Centre Detudes Biologiques de Chizé; FranciaFil: Dann, Peter. Phillip Island Nature Parks; AustraliaFil: Mattern, Thomas. University of Otago; Nueva ZelandaFil: Ellenberg, Ursula. Global Penguin Society; Estados Unidos. La Trobe University; AustraliaFil: Garcia Borboroglu, Jorge Pablo. University of Washington; Estados Unidos. Global Penguin Society; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Centro para el Estudio de Sistemas Marinos; ArgentinaFil: Argilla, Lisa S.. Otago Polytechnic; Nueva ZelandaFil: Bertelsen, Mads F.. Copenhagen Zoo; Dinamarca. University of Copenhagen; DinamarcaFil: Fiddaman, Steven R.. University of Oxford; Reino UnidoFil: Howard, Pauline. Hornby Veterinary Centre; Nueva Zelanda. South Island Wildlife Hospital; Nueva ZelandaFil: Labuschagne, Kim. National Zoological Garden; SudáfricaFil: Miller, Gary. University of Western Australia; Australia. University of Tasmania; AustraliaFil: Parker, Patricia. University of Missouri St. Louis; Estados UnidosFil: Phillips, Richard A.. Natural Environment Research Council; Reino UnidoFil: Quillfeldt, Petra. Justus-Liebig-Universit ̈ at Giessen; AlemaniaFil: Ryan, Peter G.. University of Cape Town; SudáfricaFil: Taylor, Helen. Vet Services Hawkes Bay Ltd; Nueva Zelanda. Wairoa Farm Vets; Nueva ZelandaFil: Zhang, De-Xing. Chinese Academy of Sciences; República de ChinaFil: Zhang, Guojie. BGI-Shenzhen; China. Chinese Academy of Sciences; República de China. University of Copenhagen; DinamarcaFil: McKinlay, Bruce. Department of Conservation; Nueva ZelandaOxford University Press2019-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/113838Pan, Hailin; Cole, Theresa L; Bi, Xupeng; Fang, Miaoquan; Zhou, Chengran; et al.; High-coverage genomes to elucidate the evolution of penguins; Oxford University Press; GigaScience; 8; 9-2019; 1-172047-217XCONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/gigascience/article/doi/10.1093/gigascience/giz117/5571031info:eu-repo/semantics/altIdentifier/doi/10.1093/gigascience/giz117info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2026-08-25T15:40:13Zoai:ri.conicet.gov.ar:11336/113838instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982026-08-25 15:40:13.766CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
| dc.title.none.fl_str_mv |
High-coverage genomes to elucidate the evolution of penguins |
| title |
High-coverage genomes to elucidate the evolution of penguins |
| spellingShingle |
High-coverage genomes to elucidate the evolution of penguins Pan, Hailin GENOMICS SPHENISCIFORMES COMPARATIVE EVOLUTION PHYLOGENETICS SPECIATION BIOGEOGRAPHY DEMOGRAPHY CLIMATE CHANGE ANTARCTICA EVOLUTION |
| title_short |
High-coverage genomes to elucidate the evolution of penguins |
| title_full |
High-coverage genomes to elucidate the evolution of penguins |
| title_fullStr |
High-coverage genomes to elucidate the evolution of penguins |
| title_full_unstemmed |
High-coverage genomes to elucidate the evolution of penguins |
| title_sort |
High-coverage genomes to elucidate the evolution of penguins |
| dc.creator.none.fl_str_mv |
Pan, Hailin Cole, Theresa L Bi, Xupeng Fang, Miaoquan Zhou, Chengran Yang, Zhengtao Ksepka, Daniel T Hart, Tom Bouzat, Juan L. Boersma, P. Dee Bost, Charles-André Cherel, Yves Dann, Peter Mattern, Thomas Ellenberg, Ursula Garcia Borboroglu, Jorge Pablo Argilla, Lisa S. Bertelsen, Mads F. Fiddaman, Steven R. Howard, Pauline Labuschagne, Kim Miller, Gary Parker, Patricia Phillips, Richard A. Quillfeldt, Petra Ryan, Peter G. Taylor, Helen Zhang, De-Xing Zhang, Guojie McKinlay, Bruce |
| author |
Pan, Hailin |
| author_facet |
Pan, Hailin Cole, Theresa L Bi, Xupeng Fang, Miaoquan Zhou, Chengran Yang, Zhengtao Ksepka, Daniel T Hart, Tom Bouzat, Juan L. Boersma, P. Dee Bost, Charles-André Cherel, Yves Dann, Peter Mattern, Thomas Ellenberg, Ursula Garcia Borboroglu, Jorge Pablo Argilla, Lisa S. Bertelsen, Mads F. Fiddaman, Steven R. Howard, Pauline Labuschagne, Kim Miller, Gary Parker, Patricia Phillips, Richard A. Quillfeldt, Petra Ryan, Peter G. Taylor, Helen Zhang, De-Xing Zhang, Guojie McKinlay, Bruce |
| author_role |
author |
| author2 |
Cole, Theresa L Bi, Xupeng Fang, Miaoquan Zhou, Chengran Yang, Zhengtao Ksepka, Daniel T Hart, Tom Bouzat, Juan L. Boersma, P. Dee Bost, Charles-André Cherel, Yves Dann, Peter Mattern, Thomas Ellenberg, Ursula Garcia Borboroglu, Jorge Pablo Argilla, Lisa S. Bertelsen, Mads F. Fiddaman, Steven R. Howard, Pauline Labuschagne, Kim Miller, Gary Parker, Patricia Phillips, Richard A. Quillfeldt, Petra Ryan, Peter G. Taylor, Helen Zhang, De-Xing Zhang, Guojie McKinlay, Bruce |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.subject.none.fl_str_mv |
GENOMICS SPHENISCIFORMES COMPARATIVE EVOLUTION PHYLOGENETICS SPECIATION BIOGEOGRAPHY DEMOGRAPHY CLIMATE CHANGE ANTARCTICA EVOLUTION |
| topic |
GENOMICS SPHENISCIFORMES COMPARATIVE EVOLUTION PHYLOGENETICS SPECIATION BIOGEOGRAPHY DEMOGRAPHY CLIMATE CHANGE ANTARCTICA EVOLUTION |
| purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
| dc.description.none.fl_txt_mv |
Background: Penguins (Sphenisciformes) are a remarkable order of flightless wing-propelled diving seabirds distributed widely across the southern hemisphere. They share a volant common ancestor with Procellariiformes close to the Cretaceous-Paleogene boundary (66 million years ago) and subsequently lost the ability to fly but enhanced their diving capabilities. With ∼20 species among 6 genera, penguins range from the tropical Galápagos Islands to the oceanic temperate forests of New Zealand, the rocky coastlines of the sub-Antarctic islands, and the sea ice around Antarctica. To inhabit such diverse and extreme environments, penguins evolved many physiological and morphological adaptations. However, they are also highly sensitive to climate change. Therefore, penguins provide an exciting target system for understanding the evolutionary processes of speciation, adaptation, and demography. Genomic data are an emerging resource for addressing questions about such processes. Results: Here we present a novel dataset of 19 high-coverage genomes that, together with 2 previously published genomes, encompass all extant penguin species. We also present a well-supported phylogeny to clarify the relationships among penguins. In contrast to recent studies, our results demonstrate that the genus Aptenodytes is basal and sister to all other extant penguin genera, providing intriguing new insights into the adaptation of penguins to Antarctica. As such, our dataset provides a novel resource for understanding the evolutionary history of penguins as a clade, as well as the fine-scale relationships of individual penguin lineages. Against this background, we introduce a major consortium of international scientists dedicated to studying these genomes. Moreover, we highlight emerging issues regarding ensuring legal and respectful indigenous consultation, particularly for genomic data originating from New Zealand Taonga species. Conclusions: We believe that our dataset and project will be important for understanding evolution, increasing cultural heritage and guiding the conservation of this iconic southern hemisphere species assemblage. Fil: Pan, Hailin. Bgi-shenzhen; China Fil: Cole, Theresa L. University Of Otago; Canadá Fil: Bi, Xupeng. Bgi-shenzhen; China Fil: Fang, Miaoquan. Bgi-shenzhen; China Fil: Zhou, Chengran. Bgi-shenzhen; China Fil: Yang, Zhengtao. Bgi-shenzhen; China Fil: Ksepka, Daniel T. Bruce Museum; Estados Unidos Fil: Hart, Tom. University of Oxford; Reino Unido Fil: Bouzat, Juan L.. Bowling Green State University; Estados Unidos Fil: Boersma, P. Dee. University of Washington; Estados Unidos Fil: Bost, Charles-André. Centre Detudes Biologiques de Chizé; Francia Fil: Cherel, Yves. Centre Detudes Biologiques de Chizé; Francia Fil: Dann, Peter. Phillip Island Nature Parks; Australia Fil: Mattern, Thomas. University of Otago; Nueva Zelanda Fil: Ellenberg, Ursula. Global Penguin Society; Estados Unidos. La Trobe University; Australia Fil: Garcia Borboroglu, Jorge Pablo. University of Washington; Estados Unidos. Global Penguin Society; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Centro para el Estudio de Sistemas Marinos; Argentina Fil: Argilla, Lisa S.. Otago Polytechnic; Nueva Zelanda Fil: Bertelsen, Mads F.. Copenhagen Zoo; Dinamarca. University of Copenhagen; Dinamarca Fil: Fiddaman, Steven R.. University of Oxford; Reino Unido Fil: Howard, Pauline. Hornby Veterinary Centre; Nueva Zelanda. South Island Wildlife Hospital; Nueva Zelanda Fil: Labuschagne, Kim. National Zoological Garden; Sudáfrica Fil: Miller, Gary. University of Western Australia; Australia. University of Tasmania; Australia Fil: Parker, Patricia. University of Missouri St. Louis; Estados Unidos Fil: Phillips, Richard A.. Natural Environment Research Council; Reino Unido Fil: Quillfeldt, Petra. Justus-Liebig-Universit ̈ at Giessen; Alemania Fil: Ryan, Peter G.. University of Cape Town; Sudáfrica Fil: Taylor, Helen. Vet Services Hawkes Bay Ltd; Nueva Zelanda. Wairoa Farm Vets; Nueva Zelanda Fil: Zhang, De-Xing. Chinese Academy of Sciences; República de China Fil: Zhang, Guojie. BGI-Shenzhen; China. Chinese Academy of Sciences; República de China. University of Copenhagen; Dinamarca Fil: McKinlay, Bruce. Department of Conservation; Nueva Zelanda |
| description |
Background: Penguins (Sphenisciformes) are a remarkable order of flightless wing-propelled diving seabirds distributed widely across the southern hemisphere. They share a volant common ancestor with Procellariiformes close to the Cretaceous-Paleogene boundary (66 million years ago) and subsequently lost the ability to fly but enhanced their diving capabilities. With ∼20 species among 6 genera, penguins range from the tropical Galápagos Islands to the oceanic temperate forests of New Zealand, the rocky coastlines of the sub-Antarctic islands, and the sea ice around Antarctica. To inhabit such diverse and extreme environments, penguins evolved many physiological and morphological adaptations. However, they are also highly sensitive to climate change. Therefore, penguins provide an exciting target system for understanding the evolutionary processes of speciation, adaptation, and demography. Genomic data are an emerging resource for addressing questions about such processes. Results: Here we present a novel dataset of 19 high-coverage genomes that, together with 2 previously published genomes, encompass all extant penguin species. We also present a well-supported phylogeny to clarify the relationships among penguins. In contrast to recent studies, our results demonstrate that the genus Aptenodytes is basal and sister to all other extant penguin genera, providing intriguing new insights into the adaptation of penguins to Antarctica. As such, our dataset provides a novel resource for understanding the evolutionary history of penguins as a clade, as well as the fine-scale relationships of individual penguin lineages. Against this background, we introduce a major consortium of international scientists dedicated to studying these genomes. Moreover, we highlight emerging issues regarding ensuring legal and respectful indigenous consultation, particularly for genomic data originating from New Zealand Taonga species. Conclusions: We believe that our dataset and project will be important for understanding evolution, increasing cultural heritage and guiding the conservation of this iconic southern hemisphere species assemblage. |
| publishDate |
2019 |
| dc.date.none.fl_str_mv |
2019-09 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
| format |
article |
| status_str |
publishedVersion |
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http://hdl.handle.net/11336/113838 Pan, Hailin; Cole, Theresa L; Bi, Xupeng; Fang, Miaoquan; Zhou, Chengran; et al.; High-coverage genomes to elucidate the evolution of penguins; Oxford University Press; GigaScience; 8; 9-2019; 1-17 2047-217X CONICET Digital CONICET |
| url |
http://hdl.handle.net/11336/113838 |
| identifier_str_mv |
Pan, Hailin; Cole, Theresa L; Bi, Xupeng; Fang, Miaoquan; Zhou, Chengran; et al.; High-coverage genomes to elucidate the evolution of penguins; Oxford University Press; GigaScience; 8; 9-2019; 1-17 2047-217X CONICET Digital CONICET |
| dc.language.none.fl_str_mv |
eng |
| language |
eng |
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info:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/gigascience/article/doi/10.1093/gigascience/giz117/5571031 info:eu-repo/semantics/altIdentifier/doi/10.1093/gigascience/giz117 |
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info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/2.5/ar/ |
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openAccess |
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application/pdf application/pdf |
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Oxford University Press |
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Oxford University Press |
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